Focus on samtools vulnerabilities and metrics.
Last updated: 29 Mar 2026, 22:25 UTC
This page consolidates all known Common Vulnerabilities and Exposures (CVEs) associated with samtools. We track both calendar-based metrics (using fixed periods) and rolling metrics (using gliding windows) to give you a comprehensive view of security trends and risk evolution. Use these insights to assess risk and plan your patching strategy.
For a broader perspective on cybersecurity threats, explore the comprehensive list of CVEs by vendor and product. Stay updated on critical vulnerabilities affecting major software and hardware providers.
Total samtools CVEs: 2
Earliest CVE date: 29 Nov 2022, 17:15 UTC
Latest CVE date: 18 Mar 2026, 21:16 UTC
Latest CVE reference: CVE-2026-31973
30-day Count (Rolling): 1
365-day Count (Rolling): 1
Calendar-based Variation
Calendar-based Variation compares a fixed calendar period (e.g., this month versus the same month last year), while Rolling Growth Rate uses a continuous window (e.g., last 30 days versus the previous 30 days) to capture trends independent of calendar boundaries.
Month Variation (Calendar): 0%
Year Variation (Calendar): 0%
Month Growth Rate (30-day Rolling): 0.0%
Year Growth Rate (365-day Rolling): 0.0%
Average CVSS: 0.0
Max CVSS: 0
Critical CVEs (≥9): 0
| Range | Count |
|---|---|
| 0.0-3.9 | 2 |
| 4.0-6.9 | 0 |
| 7.0-8.9 | 0 |
| 9.0-10.0 | 0 |
These are the five CVEs with the highest CVSS scores for samtools, sorted by severity first and recency.
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir() function in util/IOUtil.java not checking for the existence of the temporary directory before attempting to create it.